| 1. | Theofanis Gekas
Panathinaikos/Kallithea | Greece | 25 | 18 |
| 2. | Luciano
Xanthi | Brazil | 32 | 16 |
| 3. | Michalis Konstantinou
Panathinaikos | Cyprus | 27 | 15 |
| 4. | Dimitrios Salpingidis
PAOK Thessaloniki | Greece | 23 | 14 |
| | Giorgos Barkoglou
Egaleo | Greece | 26 | 14 |
| 6. | Nikos Machlas
OFI Crete | Greece | 31 | 13 |
| 7. | Rivaldo
Olympiacos | Brazil | 33 | 12 |
| 8. | Alexandre Soares
AEK Athens | Brazil | 32 | 11 |
| | Patrick Ogunsoto
Ergotelis | Nigeria | 22 | 11 |
| 10. | Giorgos Zacharopoulos
Atromitos | Greece | 33 | 10 |
| | Giovanni
Olympiacos | Brazil | 33 | 10 |
| | Kostas Katsouranis
AEK Athens | Greece | 25 | 10 |
| 13. | Christos Iliopoulos
Atromitos | Greece | 28 | 9 |
| | Cleyton
Apollon Kalamarias | Brazil | 22 | 9 |
| | Nikos Liberopoulos
AEK Athens | Greece | 30 | 9 |
| 16. | Dimitris Papadopoulos
Panathinaikos | Greece | 23 | 8 |
| | Oliver Makor
Ionikos | Liberia | 31 | 8 |
| 18. | Athanasios Tsigas
Kallithea | Greece | 22 | 7 |
| | Marcin Mieciel
PAOK Thessaloniki/Iraklis | Poland | 29 | 7 |
| 20. | Charilaos Pappas
Apollon Kalamarias | Greece | 22 | 6 |
| | Christos Maladenis
PAOK Thessaloniki | Greece | 31 | 6 |
| | Deniz Baykara
Xanthi | Türkiye | 21 | 6 |
| | Guy Feutchine
PAOK Thessaloniki | Cameroon | 28 | 6 |
| | Indrit Fortuzi
Iraklis | Albania | 31 | 6 |
| | Ioannis Lazanas
Aris | Greece | 25 | 6 |
| | Mário Breska
Panionios | Slovakia | 25 | 6 |
| | Metodi Deyanov
OFI Crete | Bulgaria | 30 | 6 |
| | Nery Castillo
Olympiacos | Mexico | 20 | 6 |
| | Nikolaos Nikolopoulos
Egaleo | Greece | 27 | 6 |
