| 1. | Ismael Blanco
AEK Athens | Argentina | 25 | 20 |
| 2. | Darko Kovacevic
Olympiacos | Serbia | 34 | 17 |
| 3. | Dimitrios Salpingidis
Panathinaikos | Greece | 26 | 15 |
| | Rafik Djebbour
Panionios | Algeria | 24 | 15 |
| 5. | Tomasz Radzinski
Xanthi | Canada | 34 | 14 |
| 6. | Nikos Liberopoulos
AEK Athens | Greece | 33 | 13 |
| 7. | Rivaldo
AEK Athens | Brazil | 36 | 12 |
| 8. | Koke
Aris | Spain | 25 | 10 |
| | Lampros Choutos
Panionios | Greece | 28 | 10 |
| | Predrag Dordevic
Olympiacos | Serbia | 35 | 10 |
| 11. | Lucio Filomeno
Asteras Tripolis | Argentina | 28 | 9 |
| 12. | Danijel Cesarec
Asteras Tripolis | Croatia | 25 | 8 |
| | Eduardo Bustos Montoya
Levadiakos | Argentina | 31 | 8 |
| | Emanuel Perrone
Atromitos/Apollon Kalamarias | Argentina | 24 | 8 |
| | Giorgos Barkoglou
Xanthi/Apollon Kalamarias | Greece | 29 | 8 |
| | Luciano
Atromitos | Brazil | 35 | 8 |
| | Stelios Sfakianakis
OFI Crete | Greece | 32 | 8 |
| 18. | Cleyton
Larissa | Brazil | 25 | 7 |
| | Júnior
Ergotelis | Brazil | 31 | 7 |
| 20. | Edinho
AEK Athens | Portugal | 25 | 6 |
| | Giorgos Karagounis
Panathinaikos | Greece | 31 | 6 |
| | Leonardo
Levadiakos | Brazil | 21 | 6 |
| | Maciej Zurawski
Larissa | Poland | 31 | 6 |
| | Patrick Dimbala
Levadiakos | Democratic Republic of the Congo | 25 | 6 |
| | Patrick Ogunsoto
Ergotelis | Nigeria | 25 | 6 |
